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  5. AT1G52650

AT1G52650


Description : F-box/RNI-like superfamily protein


Gene families : OG0000914 (Archaeplastida) Phylogenetic Tree(s): OG0000914_tree ,
OG_05_0000543 (LandPlants) Phylogenetic Tree(s): OG_05_0000543_tree ,
OG_06_0000263 (SeedPlants) Phylogenetic Tree(s): OG_06_0000263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G52650
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT1G19070 No alias F-box family protein 0.03 Archaeplastida
AT1G64540 No alias F-box/FBD-like domains containing protein 0.04 Archaeplastida
AT2G29930 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT2G42720 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.04 Archaeplastida
AT3G54160 No alias RNI-like superfamily protein 0.04 Archaeplastida
AT3G58860 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT3G58980 No alias F-box family protein 0.03 Archaeplastida
AT3G59230 No alias RNI-like superfamily protein 0.05 Archaeplastida
AT3G59240 No alias RNI-like superfamily protein 0.04 Archaeplastida
AT3G62440 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT4G00320 No alias F-box/RNI-like superfamily protein 0.03 Archaeplastida
AT4G22280 No alias F-box/RNI-like superfamily protein 0.03 Archaeplastida
AT5G15620 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT5G25860 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT5G35926 No alias Protein with RNI-like/FBD-like domains 0.05 Archaeplastida
AT5G38392 No alias No description available 0.04 Archaeplastida
AT5G38396 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0001872 (1->3)-beta-D-glucan binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
MF GO:0004407 histone deacetylase activity IEP Neighborhood
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
CC GO:0008278 cohesin complex IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
BP GO:0010032 meiotic chromosome condensation IEP Neighborhood
BP GO:0010440 stomatal lineage progression IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
CC GO:0031226 intrinsic component of plasma membrane IEP Neighborhood
MF GO:0033558 protein deacetylase activity IEP Neighborhood
CC GO:0046658 anchored component of plasma membrane IEP Neighborhood
BP GO:0048240 sperm capacitation IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
BP GO:0051177 meiotic sister chromatid cohesion IEP Neighborhood
BP GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation IEP Neighborhood
BP GO:0051455 attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation IEP Neighborhood
BP GO:0051754 meiotic sister chromatid cohesion, centromeric IEP Neighborhood
BP GO:0060341 regulation of cellular localization IEP Neighborhood
BP GO:0070601 centromeric sister chromatid cohesion IEP Neighborhood
BP GO:0080154 regulation of fertilization IEP Neighborhood
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097472 cyclin-dependent protein kinase activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903827 regulation of cellular protein localization IEP Neighborhood
BP GO:2000008 regulation of protein localization to cell surface IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 46 80
No external refs found!