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  5. AMTR_s00061p00032260

AMTR_s00061p00032260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.6

Description : RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0010945 (LandPlants) Phylogenetic Tree(s): OG_05_0010945_tree ,
OG_06_0010905 (SeedPlants) Phylogenetic Tree(s): OG_06_0010905_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00032260
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.09 Archaeplastida
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.08 Archaeplastida
AT3G53460 CP29 chloroplast RNA-binding protein 29 0.03 Archaeplastida
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.09 Archaeplastida
Cpa|evm.model.tig00000944.16 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
GSVIVT01022600001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.03 Archaeplastida
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.04 Archaeplastida
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.11 Archaeplastida
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_05747 No alias component psPSRP2 of small ribosomal subunit proteome 0.06 Archaeplastida
Gb_29798 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.03 Archaeplastida
Gb_32176 No alias component psPSRP2 of small ribosomal subunit proteome 0.04 Archaeplastida
Gb_33449 No alias component psPSRP2 of small ribosomal subunit proteome 0.03 Archaeplastida
LOC_Os02g57010.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
LOC_Os03g25960.1 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os05g13620.1 No alias Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba... 0.03 Archaeplastida
LOC_Os07g06450.1 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os08g44290.1 No alias RNA editing factor (CP31) 0.05 Archaeplastida
LOC_Os09g39180.1 No alias RNA editing factor (CP31) 0.04 Archaeplastida
MA_185349g0010 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
MA_367032g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_474396g0010 No alias RNA editing factor (CP31) 0.04 Archaeplastida
MA_7844926g0010 No alias Organelle RRM domain-containing protein 1, chloroplastic... 0.07 Archaeplastida
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.08 Archaeplastida
Mp3g24820.1 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.03 Archaeplastida
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.11 Archaeplastida
Pp3c12_9890V3.1 No alias chloroplast RNA-binding protein 29 0.07 Archaeplastida
Pp3c8_16740V3.1 No alias chloroplast RNA-binding protein 29 0.06 Archaeplastida
Solyc01g006940.4.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.07 Archaeplastida
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.07 Archaeplastida
Solyc09g090960.4.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Solyc10g086150.2.1 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Zm00001e001824_P002 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e003947_P001 No alias RNA editing factor (CP31) 0.04 Archaeplastida
Zm00001e010844_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Zm00001e016211_P001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Zm00001e022086_P002 No alias RNA editing factor (CP31) 0.07 Archaeplastida
Zm00001e032835_P001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e033465_P001 No alias RNA editing factor (CP31) 0.07 Archaeplastida
Zm00001e035630_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0004618 phosphoglycerate kinase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005960 glycine cleavage complex IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006541 glutamine metabolic process IEP Neighborhood
BP GO:0006542 glutamine biosynthetic process IEP Neighborhood
BP GO:0006546 glycine catabolic process IEP Neighborhood
BP GO:0006553 lysine metabolic process IEP Neighborhood
BP GO:0006772 thiamine metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009063 cellular amino acid catabolic process IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009071 serine family amino acid catabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009085 lysine biosynthetic process IEP Neighborhood
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Neighborhood
BP GO:0009228 thiamine biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015995 chlorophyll biosynthetic process IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
MF GO:0019203 carbohydrate phosphatase activity IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity IEP Neighborhood
BP GO:0042135 neurotransmitter catabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0042723 thiamine-containing compound metabolic process IEP Neighborhood
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Neighborhood
BP GO:0046451 diaminopimelate metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0050308 sugar-phosphatase activity IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
BP GO:0051205 protein insertion into membrane IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901606 alpha-amino acid catabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 92 162
IPR000504 RRM_dom 193 258
No external refs found!