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  5. AMTR_s00061p00035580

AMTR_s00061p00035580


Description : Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00035580

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00160280 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.15 Archaeplastida
AMTR_s00003p00182540 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 Archaeplastida
AMTR_s00006p00257350 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.09 Archaeplastida
AMTR_s00019p00238380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g35130,... 0.05 Archaeplastida
AMTR_s00022p00232590 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00177p00030580 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
AMTR_s00276p00017800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
Cpa|evm.model.tig00021312.67 No alias No description available 0.01 Archaeplastida
GSVIVT01008537001 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.04 Archaeplastida
Gb_37510 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
LOC_Os11g01836.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Smo428483 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.09 Archaeplastida
Smo74627 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Smo92008 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
Solyc02g084830.4.1 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.04 Archaeplastida
Solyc02g094480.4.1 No alias RNA editing factor (MEF14) 0.03 Archaeplastida
Zm00001e012838_P001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.02 Archaeplastida
Zm00001e034903_P001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 197 222
IPR002885 Pentatricopeptide_repeat 169 195
IPR002885 Pentatricopeptide_repeat 402 425
IPR002885 Pentatricopeptide_repeat 326 374
IPR002885 Pentatricopeptide_repeat 225 273
No external refs found!