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  5. AMTR_s00061p00064900

AMTR_s00061p00064900 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.39

No description available


Gene families : OG0001171 (Archaeplastida) Phylogenetic Tree(s): OG0001171_tree ,
OG_05_0001325 (LandPlants) Phylogenetic Tree(s): OG_05_0001325_tree ,
OG_06_0001016 (SeedPlants) Phylogenetic Tree(s): OG_06_0001016_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00064900
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AT1G36070 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
AT1G78070 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
AT5G56190 No alias Transducin/WD40 repeat-like superfamily protein 0.07 Archaeplastida
GSVIVT01031657001 No alias No description available 0.03 Archaeplastida
Gb_29305 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g48964.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os03g26870.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g31560.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_28828g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023407_P003 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e031051_P005 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036380_P002 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 313 345
No external refs found!