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  5. AMTR_s00061p00170900

AMTR_s00061p00170900 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.179

Description : Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0004527 (Archaeplastida) Phylogenetic Tree(s): OG0004527_tree ,
OG_05_0003301 (LandPlants) Phylogenetic Tree(s): OG_05_0003301_tree ,
OG_06_0005607 (SeedPlants) Phylogenetic Tree(s): OG_06_0005607_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00170900
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01036253001 No alias Pentatricopeptide repeat-containing protein At1g12620... 0.03 Archaeplastida
Smo94034 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 185 232
IPR002885 Pentatricopeptide_repeat 8 57
IPR002885 Pentatricopeptide_repeat 78 127
IPR002885 Pentatricopeptide_repeat 138 168
No external refs found!