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  5. AMTR_s00061p00172870

AMTR_s00061p00172870 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.184

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor


Gene families : OG0000948 (Archaeplastida) Phylogenetic Tree(s): OG0000948_tree ,
OG_05_0001459 (LandPlants) Phylogenetic Tree(s): OG_05_0001459_tree ,
OG_06_0001518 (SeedPlants) Phylogenetic Tree(s): OG_06_0001518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00172870

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00175490 evm_27.TU.AmTr_v1... Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G28050 No alias B-box type zinc finger protein with CCT domain 0.03 Archaeplastida
GSVIVT01011821001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
Solyc05g046040.2.1 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
Zm00001e003699_P002 No alias transcription factor (BBX-CO) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR010402 CCT_domain 353 396
IPR000315 Znf_B-box 46 89
No external refs found!