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  5. AMTR_s00061p00191420

AMTR_s00061p00191420 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.220

Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.ABO5 splicing factor


Gene families : OG0010502 (Archaeplastida) Phylogenetic Tree(s): OG0010502_tree ,
OG_05_0010495 (LandPlants) Phylogenetic Tree(s): OG_05_0010495_tree ,
OG_06_0009776 (SeedPlants) Phylogenetic Tree(s): OG_06_0009776_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00191420
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AT1G51965 ABO5 ABA Overly-Sensitive 5 0.02 Archaeplastida
LOC_Os02g13340.1 No alias ABO5 mitochondrial RNA splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004659 prenyltransferase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
MF GO:0070403 NAD+ binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 470 503
IPR002885 Pentatricopeptide_repeat 579 622
IPR002885 Pentatricopeptide_repeat 233 279
IPR002885 Pentatricopeptide_repeat 509 556
IPR002885 Pentatricopeptide_repeat 303 349
IPR002885 Pentatricopeptide_repeat 408 437
IPR002885 Pentatricopeptide_repeat 200 229
IPR002885 Pentatricopeptide_repeat 130 161
No external refs found!