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  5. AMTR_s00062p00057610

AMTR_s00062p00057610 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00062.31

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL6 component


Gene families : OG0002223 (Archaeplastida) Phylogenetic Tree(s): OG0002223_tree ,
OG_05_0005828 (LandPlants) Phylogenetic Tree(s): OG_05_0005828_tree ,
OG_06_0007430 (SeedPlants) Phylogenetic Tree(s): OG_06_0007430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00062p00057610
Cluster HCCA: Cluster_239

Target Alias Description ECC score Gene Family Method Actions
AT1G05190 emb2394 Ribosomal protein L6 family 0.07 Archaeplastida
Cre09.g415950 No alias Protein biosynthesis.organelle translation... 0.06 Archaeplastida
GSVIVT01030599001 No alias Protein biosynthesis.organelle translation... 0.06 Archaeplastida
Gb_27916 No alias component psRPL6 of large ribosomal subunit proteome 0.03 Archaeplastida
LOC_Os03g24020.1 No alias component psRPL6 of large ribosomal subunit proteome 0.05 Archaeplastida
LOC_Os03g54040.1 No alias component psRPL6 of large ribosomal subunit proteome 0.06 Archaeplastida
MA_54628g0010 No alias component psRPL6 of large ribosomal subunit proteome 0.05 Archaeplastida
MA_65574g0010 No alias 50S ribosomal protein L6, chloroplastic OS=Spinacia... 0.03 Archaeplastida
Mp1g03630.1 No alias component psRPL6 of large ribosomal subunit proteome 0.07 Archaeplastida
Pp3c11_25510V3.1 No alias Ribosomal protein L6 family 0.04 Archaeplastida
Pp3s128_40V3.1 No alias Ribosomal protein L6 family 0.06 Archaeplastida
Solyc12g100160.3.1 No alias component psRPL6 of large ribosomal subunit proteome 0.06 Archaeplastida
Zm00001e001699_P002 No alias component psRPL6 of large ribosomal subunit proteome 0.02 Archaeplastida
Zm00001e038182_P002 No alias component psRPL6 of large ribosomal subunit proteome 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 55 127
IPR020040 Ribosomal_L6_a/b-dom 135 209
No external refs found!