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  5. AT1G05120

AT1G05120


Description : Helicase protein with RING/U-box domain


Gene families : OG0002595 (Archaeplastida) Phylogenetic Tree(s): OG0002595_tree ,
OG_05_0002772 (LandPlants) Phylogenetic Tree(s): OG_05_0002772_tree ,
OG_06_0002454 (SeedPlants) Phylogenetic Tree(s): OG_06_0002454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G05120
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g32730.1 No alias chromatin remodeling factor (Rad5-like) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
BP GO:0000303 response to superoxide IEP Neighborhood
BP GO:0000305 response to oxygen radical IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
BP GO:0009751 response to salicylic acid IEP Neighborhood
BP GO:0009756 carbohydrate mediated signaling IEP Neighborhood
BP GO:0009873 ethylene-activated signaling pathway IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010039 response to iron ion IEP Neighborhood
BP GO:0010182 sugar mediated signaling pathway IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
MF GO:0016906 sterol 3-beta-glucosyltransferase activity IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0048316 seed development IEP Neighborhood
BP GO:0048366 leaf development IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048608 reproductive structure development IEP Neighborhood
BP GO:0048825 cotyledon development IEP Neighborhood
MF GO:0051507 beta-sitosterol UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0071241 cellular response to inorganic substance IEP Neighborhood
BP GO:0071248 cellular response to metal ion IEP Neighborhood
BP GO:0071281 cellular response to iron ion IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 663 777
IPR018957 Znf_C3HC4_RING-type 579 618
IPR000330 SNF2_N 151 412
No external refs found!