AMTR_s00062p00211520 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00062.234

Description : RNA biosynthesis.transcriptional activation.SBP transcription factor

Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00062p00211520
Cluster	HCCA: Cluster_133

Target	Alias	Description	ECC score	Gene Family Method
AT1G27360	SPL11	squamosa promoter-like 11	0.03	Archaeplastida
AT5G43270	SPL2	squamosa promoter binding protein-like 2	0.02	Archaeplastida
Cre05.g233551	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.01	Archaeplastida
Cre16.g673250	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.02	Archaeplastida
GSVIVT01003836001	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.03	Archaeplastida
Mp1g10020.1	No alias	transcription factor (SBP)	0.03	Archaeplastida
Mp1g10030.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
Pp3c3_23940V3.1	No alias	squamosa promoter binding protein-like 1	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Neighborhood
MF	GO:0033897	ribonuclease T2 activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	52	127

External Links

No external refs found!