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  5. AMTR_s00063p00034480

AMTR_s00063p00034480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00063.6

Description : RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Pfs2/FY component


Gene families : OG0005339 (Archaeplastida) Phylogenetic Tree(s): OG0005339_tree ,
OG_05_0007249 (LandPlants) Phylogenetic Tree(s): OG_05_0007249_tree ,
OG_06_0007786 (SeedPlants) Phylogenetic Tree(s): OG_06_0007786_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00063p00034480
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020693.6 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.01 Archaeplastida
Gb_40875 No alias component Pfs2/FY of Cleavage and Polyadenylation... 0.04 Archaeplastida
LOC_Os01g72220.1 No alias component Pfs2/FY of Cleavage and Polyadenylation... 0.02 Archaeplastida
Pp3c16_16500V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Solyc08g067040.4.1 No alias component Pfs2/FY of Cleavage and Polyadenylation... 0.08 Archaeplastida
Zm00001e018628_P002 No alias component Pfs2/FY of Cleavage and Polyadenylation... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006760 folic acid-containing compound metabolic process IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 335 366
IPR001680 WD40_repeat 288 323
IPR001680 WD40_repeat 244 281
IPR001680 WD40_repeat 204 239
IPR001680 WD40_repeat 161 197
IPR001680 WD40_repeat 122 154
No external refs found!