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  5. AMTR_s00063p00087160

AMTR_s00063p00087160 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00063.11

Description : F-box protein At3g54460 OS=Arabidopsis thaliana


Gene families : OG0004869 (Archaeplastida) Phylogenetic Tree(s): OG0004869_tree ,
OG_05_0005737 (LandPlants) Phylogenetic Tree(s): OG_05_0005737_tree ,
OG_06_0007448 (SeedPlants) Phylogenetic Tree(s): OG_06_0007448_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00063p00087160
Cluster HCCA: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01013494001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Solyc11g005250.3.1 No alias chromatin remodeling factor (SHPRH) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 93 170
No external refs found!