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  5. AMTR_s00063p00161200

AMTR_s00063p00161200 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00063.48

Description : RNA biosynthesis.transcriptional activation.SRS transcription factor


Gene families : OG0001199 (Archaeplastida) Phylogenetic Tree(s): OG0001199_tree ,
OG_05_0000755 (LandPlants) Phylogenetic Tree(s): OG_05_0000755_tree ,
OG_06_0000578 (SeedPlants) Phylogenetic Tree(s): OG_06_0000578_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00063p00161200
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
AT1G75520 SRS5 SHI-related sequence 5 0.03 Archaeplastida
AT3G51060 SRS1, STY1 Lateral root primordium (LRP) protein-related 0.05 Archaeplastida
AT5G12330 LRP1 Lateral root primordium (LRP) protein-related 0.04 Archaeplastida
AT5G66350 SHI Lateral root primordium (LRP) protein-related 0.06 Archaeplastida
GSVIVT01009812001 No alias RNA biosynthesis.transcriptional activation.SRS... 0.03 Archaeplastida
GSVIVT01037267001 No alias RNA biosynthesis.transcriptional activation.SRS... 0.03 Archaeplastida
LOC_Os01g72490.1 No alias transcription factor (SRS) 0.04 Archaeplastida
LOC_Os05g32070.1 No alias transcription factor (SRS) 0.03 Archaeplastida
LOC_Os06g49830.1 No alias transcription factor (SRS) 0.03 Archaeplastida
LOC_Os08g43410.1 No alias transcription factor (SRS) 0.04 Archaeplastida
LOC_Os09g36160.1 No alias transcription factor (SRS) 0.05 Archaeplastida
MA_2299g0010 No alias transcription factor (SRS) 0.03 Archaeplastida
Solyc02g062400.3.1 No alias transcription factor (SRS) 0.04 Archaeplastida
Solyc10g054070.1.1 No alias transcription factor (SRS) 0.03 Archaeplastida
Zm00001e004006_P001 No alias transcription factor (SRS) 0.03 Archaeplastida
Zm00001e010227_P001 No alias transcription factor (SRS) 0.02 Archaeplastida
Zm00001e013256_P002 No alias transcription factor (SRS) 0.03 Archaeplastida
Zm00001e024681_P001 No alias transcription factor (SRS) 0.04 Archaeplastida
Zm00001e026854_P001 No alias transcription factor (SRS) 0.03 Archaeplastida
Zm00001e030189_P001 No alias transcription factor (SRS) 0.03 Archaeplastida
Zm00001e031567_P001 No alias transcription factor (SRS) 0.04 Archaeplastida
Zm00001e034798_P001 No alias transcription factor (SRS) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004013 adenosylhomocysteinase activity IEP Neighborhood
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006576 cellular biogenic amine metabolic process IEP Neighborhood
BP GO:0006595 polyamine metabolic process IEP Neighborhood
BP GO:0006596 polyamine biosynthetic process IEP Neighborhood
BP GO:0006597 spermine biosynthetic process IEP Neighborhood
BP GO:0006730 one-carbon metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008215 spermine metabolic process IEP Neighborhood
BP GO:0008216 spermidine metabolic process IEP Neighborhood
BP GO:0008295 spermidine biosynthetic process IEP Neighborhood
BP GO:0009309 amine biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016801 hydrolase activity, acting on ether bonds IEP Neighborhood
MF GO:0016802 trialkylsulfonium hydrolase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Neighborhood
BP GO:0044106 cellular amine metabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0097164 ammonium ion metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007818 SHI 72 230
No external refs found!