AMTR_s00064p00084600 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00064.28

Description : Ribonuclease 1 OS=Arabidopsis thaliana

Gene families : OG0000815 (Archaeplastida) Phylogenetic Tree(s): OG0000815_tree ,
OG_05_0010159 (LandPlants) Phylogenetic Tree(s): OG_05_0010159_tree ,
OG_06_0006777 (SeedPlants) Phylogenetic Tree(s): OG_06_0006777_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00064p00084600
Cluster	HCCA: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00262550	evm_27.TU.AmTr_v1...	Extracellular ribonuclease LE OS=Solanum lycopersicum	0.05	Archaeplastida
AMTR_s00012p00114570	evm_27.TU.AmTr_v1...	No description available	0.04	Archaeplastida
AT1G14220	No alias	Ribonuclease T2 family protein	0.02	Archaeplastida
Cre06.g306550	No alias	Ribonuclease 2 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01010088001	No alias	Extracellular ribonuclease LE OS=Solanum lycopersicum	0.03	Archaeplastida
GSVIVT01019974001	No alias	Extracellular ribonuclease LE OS=Solanum lycopersicum	0.04	Archaeplastida
LOC_Os01g67190.1	No alias	Ribonuclease 2 OS=Arabidopsis thaliana...	0.02	Archaeplastida
MA_4032367g0010	No alias	Ribonuclease 3 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc04g005640.3.1	No alias	Intracellular ribonuclease LX OS=Solanum lycopersicum...	0.03	Archaeplastida
Solyc05g007950.4.1	No alias	Extracellular ribonuclease LE OS=Solanum lycopersicum...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	None	Extended
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	None	Extended
MF	GO:0033897	ribonuclease T2 activity	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
MF	GO:0008762	UDP-N-acetylmuramate dehydrogenase activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016597	amino acid binding	IEP	Neighborhood
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
MF	GO:0031406	carboxylic acid binding	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
MF	GO:0043177	organic acid binding	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001568	RNase_T2-like	1	99

External Links

No external refs found!