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  5. AMTR_s00065p00148150

AMTR_s00065p00148150 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00065.105

Description : Cell cycle.regulation.cyclins.CYCD-type cyclin


Gene families : OG0000252 (Archaeplastida) Phylogenetic Tree(s): OG0000252_tree ,
OG_05_0000382 (LandPlants) Phylogenetic Tree(s): OG_05_0000382_tree ,
OG_06_0000715 (SeedPlants) Phylogenetic Tree(s): OG_06_0000715_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00065p00148150
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT4G34160 CYCD3, CYCD3;1 CYCLIN D3;1 0.06 Archaeplastida
AT5G67260 CYCD3;2 CYCLIN D3;2 0.06 Archaeplastida
Cpa|evm.model.tig00021312.11 No alias G2/mitotic-specific cyclin S13-6 OS=Glycine max 0.05 Archaeplastida
GSVIVT01000226001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
GSVIVT01000451001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.02 Archaeplastida
GSVIVT01003175001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
Gb_13023 No alias cyclin (CYCD) 0.03 Archaeplastida
Gb_37608 No alias cyclin (CYCD) 0.11 Archaeplastida
LOC_Os03g10650.1 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os03g42070.1 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os06g11410.1 No alias cyclin (CYCD) 0.01 Archaeplastida
LOC_Os07g37010.1 No alias cyclin (CYCD) 0.04 Archaeplastida
LOC_Os08g37390.1 No alias cyclin (CYCD) 0.02 Archaeplastida
LOC_Os09g02360.1 No alias cyclin (CYCD) 0.02 Archaeplastida
LOC_Os12g39830.1 No alias cyclin (CYCD) 0.02 Archaeplastida
MA_103834g0010 No alias cyclin (CYCD) 0.02 Archaeplastida
MA_10429174g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10429174g0030 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_114375g0010 No alias cyclin (CYCD) 0.04 Archaeplastida
MA_559426g0020 No alias cyclin (CYCD) 0.03 Archaeplastida
Pp3c15_17470V3.1 No alias CYCLIN D1;1 0.03 Archaeplastida
Pp3c9_8300V3.1 No alias CYCLIN D1;1 0.02 Archaeplastida
Smo15078 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.05 Archaeplastida
Smo412774 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
Solyc02g079370.3.1 No alias cyclin (CYCD) 0.02 Archaeplastida
Solyc02g092980.3.1 No alias cyclin (CYCD) 0.02 Archaeplastida
Zm00001e003084_P002 No alias cyclin (CYCD) 0.02 Archaeplastida
Zm00001e009441_P003 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e015910_P001 No alias cyclin (CYCD) 0.01 Archaeplastida
Zm00001e022508_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e033498_P001 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e034405_P005 No alias cyclin (CYCD) 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007090 obsolete regulation of S phase of mitotic cell cycle IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0042555 MCM complex IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043138 3'-5' DNA helicase activity IEP Neighborhood
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006671 Cyclin_N 54 183
IPR004367 Cyclin_C-dom 187 288
No external refs found!