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  5. AMTR_s00066p00135670

AMTR_s00066p00135670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00066.130

Description : Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0001044 (LandPlants) Phylogenetic Tree(s): OG_05_0001044_tree ,
OG_06_0000479 (SeedPlants) Phylogenetic Tree(s): OG_06_0000479_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00066p00135670
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT1G05660 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G10640 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G43880 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G43890 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G26610 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT4G01890 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G44840 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01033362001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01033364001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01038243001 No alias Polygalacturonase OS=Prunus persica 0.03 Archaeplastida
LOC_Os01g43490.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
LOC_Os03g59330.1 No alias polygalacturonase (QRT2) 0.02 Archaeplastida
LOC_Os05g46510.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os05g46520.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.01 Archaeplastida
LOC_Os05g50260.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os11g14410.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
MA_63122g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
Smo78038 No alias Cell wall.pectin.modification and... 0.05 Archaeplastida
Solyc02g067630.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc02g067640.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc04g015530.3.1 No alias polygalacturonase (QRT2) 0.03 Archaeplastida
Solyc12g019140.3.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
Solyc12g019180.2.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g019230.2.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
Solyc12g096730.3.1 No alias Polygalacturonase OS=Prunus persica... 0.01 Archaeplastida
Solyc12g096750.2.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Zm00001e019002_P001 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Zm00001e026160_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e026600_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e032294_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 53 376
No external refs found!