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  5. AMTR_s00066p00161070

AMTR_s00066p00161070 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00066.171

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).snRNP40/U5-40kDa snRNP component


Gene families : OG0006290 (Archaeplastida) Phylogenetic Tree(s): OG0006290_tree ,
OG_05_0006386 (LandPlants) Phylogenetic Tree(s): OG_05_0006386_tree ,
OG_06_0006849 (SeedPlants) Phylogenetic Tree(s): OG_06_0006849_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00066p00161070
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT2G43770 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Cpa|evm.model.tig00000718.71 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 Archaeplastida
Cre06.g255400 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Gb_02878 No alias protein factor U5-40kDa/snRNP40 of U5 small nuclear... 0.02 Archaeplastida
Solyc03g059100.3.1 No alias protein factor U5-40kDa/snRNP40 of U5 small nuclear... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
CC GO:0000502 proteasome complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003852 2-isopropylmalate synthase activity IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006551 leucine metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009098 leucine biosynthetic process IEP Neighborhood
BP GO:0009894 regulation of catabolic process IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
MF GO:0030955 potassium ion binding IEP Neighborhood
MF GO:0031420 alkali metal ion binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0042176 regulation of protein catabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 205 242
IPR001680 WD40_repeat 173 200
IPR001680 WD40_repeat 82 116
IPR001680 WD40_repeat 40 73
IPR001680 WD40_repeat 120 159
IPR001680 WD40_repeat 299 332
No external refs found!