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  5. AMTR_s00066p00170330

AMTR_s00066p00170330 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00066.198

Description : Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0010551 (Archaeplastida) Phylogenetic Tree(s): OG0010551_tree ,
OG_05_0010551 (LandPlants) Phylogenetic Tree(s): OG_05_0010551_tree ,
OG_06_0010207 (SeedPlants) Phylogenetic Tree(s): OG_06_0010207_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00066p00170330
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
Solyc11g005140.1.1 No alias Pentatricopeptide repeat-containing protein At3g02650,... 0.02 Archaeplastida
Zm00001e018963_P001 No alias Pentatricopeptide repeat-containing protein At3g02650,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0019238 cyclohydrolase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 455 499
IPR002885 Pentatricopeptide_repeat 524 569
IPR002885 Pentatricopeptide_repeat 421 447
IPR002885 Pentatricopeptide_repeat 319 342
No external refs found!