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  5. AMTR_s00066p00199930

AMTR_s00066p00199930 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00066.267

Description : Endochitinase EP3 OS=Arabidopsis thaliana


Gene families : OG0000104 (Archaeplastida) Phylogenetic Tree(s): OG0000104_tree ,
OG_05_0000272 (LandPlants) Phylogenetic Tree(s): OG_05_0000272_tree ,
OG_06_0000276 (SeedPlants) Phylogenetic Tree(s): OG_06_0000276_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00066p00199930
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01035029001 No alias Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.04 Archaeplastida
GSVIVT01038113001 No alias Endochitinase EP3 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_07463 No alias Chitinase 4 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Gb_10203 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.02 Archaeplastida
Gb_29992 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os05g33140.1 No alias Chitinase 9 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os09g32080.2 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.03 Archaeplastida
MA_10431378g0010 No alias Chitinase 4 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_10431378g0020 No alias Chitinase 6 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_381956g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_4984466g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp4g20470.1 No alias Basic endochitinase B OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp7g04510.1 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.03 Archaeplastida
Pp3c13_4480V3.1 No alias Chitinase family protein 0.04 Archaeplastida
Pp3c24_15000V3.1 No alias Chitinase family protein 0.02 Archaeplastida
Pp3c26_2880V3.1 No alias Chitinase family protein 0.02 Archaeplastida
Smo14768 No alias Chitinase 2 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Smo426710 No alias Endochitinase A OS=Zea mays 0.02 Archaeplastida
Solyc02g082960.3.1 No alias Basic endochitinase (Fragment) OS=Solanum lycopersicum... 0.02 Archaeplastida
Solyc09g098540.3.1 No alias CTL cellulose microfibrils and hemicellulose interaction protein 0.02 Archaeplastida
Solyc10g074440.2.1 No alias Endochitinase OS=Solanum tuberosum (sp|p05315|chit_soltu : 491.0) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA Interproscan
BP GO:0006032 chitin catabolic process IEA Interproscan
MF GO:0008061 chitin binding IEA Interproscan
BP GO:0016998 cell wall macromolecule catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR000726 Glyco_hydro_19_cat 77 278
IPR001002 Chitin-bd_1 27 59
No external refs found!