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  5. AMTR_s00067p00076570

AMTR_s00067p00076570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00067.51

Description : Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana


Gene families : OG0015506 (Archaeplastida) Phylogenetic Tree(s): OG0015506_tree ,
OG_05_0015365 (LandPlants) Phylogenetic Tree(s): OG_05_0015365_tree ,
OG_06_0015066 (SeedPlants) Phylogenetic Tree(s): OG_06_0015066_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00067p00076570
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
Solyc04g010050.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 275 323
IPR002885 Pentatricopeptide_repeat 348 394
IPR002885 Pentatricopeptide_repeat 100 146
IPR002885 Pentatricopeptide_repeat 416 463
IPR002885 Pentatricopeptide_repeat 206 253
IPR002885 Pentatricopeptide_repeat 36 60
IPR002885 Pentatricopeptide_repeat 72 97
No external refs found!