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  5. AMTR_s00067p00084570

AMTR_s00067p00084570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00067.62

Description : Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00067p00084570
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00181560 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g25360... 0.04 Archaeplastida
AMTR_s00003p00222920 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00039p00023570 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
AMTR_s00039p00132380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.03 Archaeplastida
AMTR_s00071p00124250 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.07 Archaeplastida
AMTR_s00078p00125150 No alias Pentatricopeptide repeat-containing protein At2g02750... 0.03 Archaeplastida
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 Archaeplastida
LOC_Os04g14130.1 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
LOC_Os06g30940.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida
LOC_Os07g10400.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os09g24680.1 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.03 Archaeplastida
MA_10430171g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Smo83339 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Solyc01g104090.4.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Solyc02g072020.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g088650.1.1 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.03 Archaeplastida
Solyc03g116840.3.1 No alias RNA editing factor (OTP81) 0.03 Archaeplastida
Solyc06g066080.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 331 356
IPR002885 Pentatricopeptide_repeat 258 283
IPR002885 Pentatricopeptide_repeat 359 389
IPR002885 Pentatricopeptide_repeat 109 138
No external refs found!