AMTR_s00067p00104300 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00067.84

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.REA1 assembly factor (MDN1)

Gene families : OG0003847 (Archaeplastida) Phylogenetic Tree(s): OG0003847_tree ,
OG_05_0004720 (LandPlants) Phylogenetic Tree(s): OG_05_0004720_tree ,
OG_06_0005414 (SeedPlants) Phylogenetic Tree(s): OG_06_0005414_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00067p00104300
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00067p00107150	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
AT1G67120	No alias	ATPases;nucleotide binding;ATP...	0.07	Archaeplastida
GSVIVT01016794001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	Archaeplastida
Gb_21123	No alias	LSU ribosomal large subunit export factor (MDN1)	0.06	Archaeplastida
LOC_Os10g31856.1	No alias	Midasin OS=Arabidopsis thaliana...	0.02	Archaeplastida
MA_16845g0010	No alias	no hits & (original description: none)	0.1	Archaeplastida
MA_91092g0020	No alias	Midasin OS=Arabidopsis thaliana...	0.08	Archaeplastida
Mp1g16360.1	No alias	LSU ribosomal large subunit export factor (MDN1)	0.02	Archaeplastida
Pp3c8_22130V3.1	No alias	ATPases;nucleotide binding;ATP...	0.04	Archaeplastida
Solyc04g072260.3.1	No alias	LSU ribosomal large subunit export factor (MDN1)	0.03	Archaeplastida
Zm00001e031919_P002	No alias	LSU ribosomal large subunit export factor (MDN1)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004181	metallocarboxypeptidase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0005543	phospholipid binding	IEP	Neighborhood
BP	GO:0007154	cell communication	IEP	Neighborhood
MF	GO:0008235	metalloexopeptidase activity	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
MF	GO:0035091	phosphatidylinositol binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011704	ATPase_dyneun-rel_AAA	502	584
IPR011704	ATPase_dyneun-rel_AAA	27	166

External Links

No external refs found!