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  5. AMTR_s00067p00174670

AMTR_s00067p00174670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00067.178

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL28 component


Gene families : OG0007106 (Archaeplastida) Phylogenetic Tree(s): OG0007106_tree ,
OG_05_0007984 (LandPlants) Phylogenetic Tree(s): OG_05_0007984_tree ,
OG_06_0007221 (SeedPlants) Phylogenetic Tree(s): OG_06_0007221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00067p00174670
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
AT2G33450 No alias Ribosomal L28 family 0.02 Archaeplastida
GSVIVT01027870001 No alias Protein biosynthesis.organelle translation... 0.05 Archaeplastida
LOC_Os05g01110.1 No alias component psRPL28 of large ribosomal subunit proteome 0.04 Archaeplastida
Pp3c5_28500V3.1 No alias Ribosomal L28 family 0.03 Archaeplastida
Solyc09g090410.3.1 No alias component psRPL28 of large ribosomal subunit proteome 0.02 Archaeplastida
Zm00001e004728_P001 No alias component psRPL28 of large ribosomal subunit proteome 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0051920 peroxiredoxin activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001383 Ribosomal_L28 87 147
No external refs found!