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  5. AMTR_s00067p00180030

AMTR_s00067p00180030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00067.188

Description : DNA damage response.BRCA1–BARD1 DNA-damage response heterodimer.BRCA1|BARD1 component


Gene families : OG0001412 (Archaeplastida) Phylogenetic Tree(s): OG0001412_tree ,
OG_05_0001772 (LandPlants) Phylogenetic Tree(s): OG_05_0001772_tree ,
OG_06_0001623 (SeedPlants) Phylogenetic Tree(s): OG_06_0001623_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00067p00180030
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G04020 BARD1, ROW1, ATBARD1 breast cancer associated RING 1 0.04 Archaeplastida
Cpa|evm.model.tig00020537.14 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.03 Archaeplastida
Cre07.g334650 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.02 Archaeplastida
Gb_00493 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.03 Archaeplastida
LOC_Os04g43300.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.03 Archaeplastida
MA_12220g0020 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 Archaeplastida
MA_66542g0010 No alias Protein BREAST CANCER SUSCEPTIBILITY 1 homolog... 0.03 Archaeplastida
Mp1g00070.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.06 Archaeplastida
Solyc06g008210.4.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 Archaeplastida
Zm00001e007590_P001 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 Archaeplastida
Zm00001e032102_P001 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
CC GO:0005664 nuclear origin of replication recognition complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009200 deoxyribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009262 deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0019692 deoxyribose phosphate metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0030337 DNA polymerase processivity factor activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0043626 PCNA complex IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044796 DNA polymerase processivity factor complex IEP Neighborhood
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Neighborhood
BP GO:0046080 dUTP metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001357 BRCT_dom 568 636
No external refs found!