1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00068p00078600

AMTR_s00068p00078600 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00068.36

Description : Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0010525 (Archaeplastida) Phylogenetic Tree(s): OG0010525_tree ,
OG_05_0010522 (LandPlants) Phylogenetic Tree(s): OG_05_0010522_tree ,
OG_06_0010132 (SeedPlants) Phylogenetic Tree(s): OG_06_0010132_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00068p00078600
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00077860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g63080,... 0.05 Archaeplastida
AMTR_s00074p00172480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g62670,... 0.05 Archaeplastida
AT4G28010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Solyc07g064625.1.1 No alias Pentatricopeptide repeat-containing protein At4g28010... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000015 phosphopyruvate hydratase complex IEP Neighborhood
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004634 phosphopyruvate hydratase activity IEP Neighborhood
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
MF GO:0008409 5'-3' exonuclease activity IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
BP GO:0016108 tetraterpenoid metabolic process IEP Neighborhood
BP GO:0016109 tetraterpenoid biosynthetic process IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
BP GO:0016116 carotenoid metabolic process IEP Neighborhood
BP GO:0016117 carotenoid biosynthetic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019238 cyclohydrolase activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 194 241
IPR002885 Pentatricopeptide_repeat 368 417
IPR002885 Pentatricopeptide_repeat 498 547
IPR002885 Pentatricopeptide_repeat 298 347
IPR002885 Pentatricopeptide_repeat 155 187
IPR002885 Pentatricopeptide_repeat 259 290
IPR002885 Pentatricopeptide_repeat 462 491
IPR002885 Pentatricopeptide_repeat 605 637
IPR002885 Pentatricopeptide_repeat 571 602
IPR002885 Pentatricopeptide_repeat 91 123
No external refs found!