AMTR_s00068p00135100 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00068.93

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SCL28/30/33 splicing factor

Gene families : OG0001329 (Archaeplastida) Phylogenetic Tree(s): OG0001329_tree ,
OG_05_0001146 (LandPlants) Phylogenetic Tree(s): OG_05_0001146_tree ,
OG_06_0001172 (SeedPlants) Phylogenetic Tree(s): OG_06_0001172_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00068p00135100
Cluster	HCCA: Cluster_262

Target	Alias	Description	ECC score	Gene Family Method
AT1G55310	SR33, At-SCL33,...	SC35-like splicing factor 33	0.03	Archaeplastida
Pp3s152_10V3.1	No alias	SC35-like splicing factor 30A	0.02	Archaeplastida
Zm00001e035636_P001	No alias	SCL28/30/33 RNA splicing factor	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
MF	GO:0008897	holo-[acyl-carrier-protein] synthase activity	IEP	Neighborhood
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	39	108

External Links

No external refs found!