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  5. AMTR_s00068p00188920

AMTR_s00068p00188920 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00068.152

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS20 component


Gene families : OG0006604 (Archaeplastida) Phylogenetic Tree(s): OG0006604_tree ,
OG_05_0006972 (LandPlants) Phylogenetic Tree(s): OG_05_0006972_tree ,
OG_06_0008603 (SeedPlants) Phylogenetic Tree(s): OG_06_0008603_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00068p00188920
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cre12.g494750 No alias Protein biosynthesis.organelle translation... 0.04 Archaeplastida
GSVIVT01014290001 No alias Protein biosynthesis.organelle translation... 0.07 Archaeplastida
Gb_27504 No alias component psRPS20 of small ribosomal subunit proteome 0.06 Archaeplastida
LOC_Os01g48690.1 No alias component psRPS20 of small ribosomal subunit proteome 0.06 Archaeplastida
Mp7g14740.1 No alias component psRPS20 of small ribosomal subunit proteome 0.05 Archaeplastida
Pp3c24_17080V3.1 No alias chloroplast 30S ribosomal protein S20, putative 0.05 Archaeplastida
Solyc07g062870.3.1 No alias component psRPS20 of small ribosomal subunit proteome 0.06 Archaeplastida
Zm00001e028066_P001 No alias component psRPS20 of small ribosomal subunit proteome 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004827 proline-tRNA ligase activity IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006433 prolyl-tRNA aminoacylation IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009538 photosystem I reaction center IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
InterPro domains Description Start Stop
IPR002583 Ribosomal_S20 18 104
No external refs found!