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  5. AMTR_s00069p00171910

AMTR_s00069p00171910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00069.147

Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG0000415 (Archaeplastida) Phylogenetic Tree(s): OG0000415_tree ,
OG_05_0000215 (LandPlants) Phylogenetic Tree(s): OG_05_0000215_tree ,
OG_06_0000299 (SeedPlants) Phylogenetic Tree(s): OG_06_0000299_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00069p00171910
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AT1G58100 No alias TCP family transcription factor 0.04 Archaeplastida
AT2G45680 No alias TCP family transcription factor 0.06 Archaeplastida
AT5G08330 No alias TCP family transcription factor 0.11 Archaeplastida
Solyc02g068200.1.1 No alias transcription factor (TCP). TCP20 circadian clock... 0.02 Archaeplastida
Solyc04g009180.3.1 No alias transcription factor (TCP). CHE circadian clock repression factor 0.03 Archaeplastida
Solyc11g020670.1.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e003744_P001 No alias transcription factor (TCP) 0.04 Archaeplastida
Zm00001e023066_P001 No alias transcription factor (TCP). CHE circadian clock repression factor 0.07 Archaeplastida
Zm00001e039492_P001 No alias transcription factor (TCP) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
InterPro domains Description Start Stop
IPR005333 Transcription_factor_TCP 80 204
No external refs found!