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  5. AMTR_s00069p00191130

AMTR_s00069p00191130 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00069.196

Description : DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica


Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0003428 (LandPlants) Phylogenetic Tree(s): OG_05_0003428_tree ,
OG_06_0003705 (SeedPlants) Phylogenetic Tree(s): OG_06_0003705_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00069p00191130
Cluster HCCA: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
AT5G62190 PRH75 DEAD box RNA helicase (PRH75) 0.04 Archaeplastida
Cpa|evm.model.tig00000093.151 No alias DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays 0.01 Archaeplastida
Gb_39948 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 Archaeplastida
Zm00001e003219_P001 No alias RNA helicase (PMH) 0.03 Archaeplastida
Zm00001e018107_P001 No alias RNA helicase (PMH) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
MF GO:0008026 ATP-dependent helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0009039 urease activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016151 nickel cation binding IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
BP GO:0019627 urea metabolic process IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043419 urea catabolic process IEP Neighborhood
BP GO:0043605 cellular amide catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0071941 nitrogen cycle metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 161 338
IPR001650 Helicase_C 415 481
IPR012562 GUCT 571 667
No external refs found!