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  5. AMTR_s00070p00154800

AMTR_s00070p00154800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00070.96

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.zf-HD transcription factor


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0000088 (SeedPlants) Phylogenetic Tree(s): OG_06_0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00070p00154800
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00261620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00024p00085480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
AT1G14440 AtHB31, ZHD4, HB31 homeobox protein 31 0.05 Archaeplastida
AT1G75240 AtHB33, ZHD5, HB33 homeobox protein 33 0.04 Archaeplastida
AT2G02540 ZHD3, HB21, ATHB21, ZFHD4 homeobox protein 21 0.07 Archaeplastida
AT5G42780 HB27, ZHD13, AtHB27 homeobox protein 27 0.03 Archaeplastida
AT5G65410 ZHD1, ZFHD2, HB25, ATHB25 homeobox protein 25 0.04 Archaeplastida
GSVIVT01000250001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01000386001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01003614001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01009721001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01012772001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Gb_18045 No alias transcription factor (zf-HD) 0.03 Archaeplastida
LOC_Os02g47770.1 No alias transcription factor (zf-HD) 0.06 Archaeplastida
LOC_Os04g35500.1 No alias transcription factor (zf-HD) 0.07 Archaeplastida
LOC_Os08g37400.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
LOC_Os09g24810.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
LOC_Os11g13930.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
LOC_Os12g10630.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_10427932g0010 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_19630g0020 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_19630g0030 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_453742g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_461761g0010 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Mp8g08190.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Pp3c19_20410V3.1 No alias homeobox protein 21 0.02 Archaeplastida
Pp3c1_15290V3.1 No alias homeobox protein 33 0.03 Archaeplastida
Pp3c21_11010V3.1 No alias homeobox protein 22 0.03 Archaeplastida
Pp3c22_9600V3.1 No alias homeobox protein 31 0.02 Archaeplastida
Pp3c2_21160V3.1 No alias homeobox protein 33 0.03 Archaeplastida
Smo38995 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Solyc01g102980.3.1 No alias transcription factor (zf-HD) 0.08 Archaeplastida
Solyc02g067310.4.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Solyc02g067320.3.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Solyc02g085160.1.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Solyc03g116070.1.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Solyc04g014260.2.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Solyc04g074990.3.1 No alias transcription factor (zf-HD) 0.07 Archaeplastida
Solyc04g080490.4.1 No alias transcription factor (zf-HD) 0.07 Archaeplastida
Solyc05g051420.2.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Zm00001e003837_P001 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Zm00001e008082_P001 No alias transcription factor (zf-HD) 0.06 Archaeplastida
Zm00001e009830_P001 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Zm00001e015590_P001 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Zm00001e018364_P001 No alias transcription factor (zf-HD) 0.06 Archaeplastida
Zm00001e021292_P003 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Zm00001e022486_P001 No alias transcription factor (zf-HD) 0.07 Archaeplastida
Zm00001e023331_P001 No alias transcription factor (zf-HD) 0.06 Archaeplastida
Zm00001e034119_P001 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e034407_P001 No alias transcription factor (zf-HD) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 47 99
No external refs found!