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  5. AMTR_s00071p00022960

AMTR_s00071p00022960 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00071.10

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.Sdo1 maturation factor


Gene families : OG0005971 (Archaeplastida) Phylogenetic Tree(s): OG0005971_tree ,
OG_05_0007761 (LandPlants) Phylogenetic Tree(s): OG_05_0007761_tree ,
OG_06_0008285 (SeedPlants) Phylogenetic Tree(s): OG_06_0008285_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00071p00022960
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
Smo130273 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Solyc04g064570.3.1 No alias Sdo1 LSU processome maturation factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Neighborhood
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0004827 proline-tRNA ligase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006433 prolyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0019238 cyclohydrolase activity IEP Neighborhood
CC GO:0030915 Smc5-Smc6 complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046834 lipid phosphorylation IEP Neighborhood
BP GO:0046854 phosphatidylinositol phosphorylation IEP Neighborhood
MF GO:0047800 cysteamine dioxygenase activity IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0106068 SUMO ligase complex IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR018978 Ribosome_mat_SBDS_C 109 229
IPR019783 Ribosome_mat_SBDS_N 15 104
No external refs found!