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  5. AMTR_s00071p00109420

AMTR_s00071p00109420 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00071.84

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0001525 (LandPlants) Phylogenetic Tree(s): OG_05_0001525_tree ,
OG_06_0001343 (SeedPlants) Phylogenetic Tree(s): OG_06_0001343_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00071p00109420
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00046180 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AT3G10710 RHS12 root hair specific 12 0.04 Archaeplastida
AT3G47400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
AT3G59010 PME61 pectin methylesterase 61 0.03 Archaeplastida
AT4G02330 ATPMEPCRB Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT4G33230 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
AT5G04960 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT5G09760 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
GSVIVT01016667001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01026518001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01027652001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01028040001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01038546001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
LOC_Os02g18650.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os07g47830.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10372207g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_10377619g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_130858g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_54974g0010 No alias pectin methylesterase 0.06 Archaeplastida
MA_84680g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_906551g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_96515g0010 No alias pectin methylesterase 0.03 Archaeplastida
Smo114014 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Smo420760 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Solyc03g083870.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc03g123620.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc06g034360.2.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc07g017600.3.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc09g075330.4.1 No alias pectin methylesterase 0.05 Archaeplastida
Zm00001e017515_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e022184_P001 No alias pectin methylesterase 0.06 Archaeplastida
Zm00001e025576_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e035838_P001 No alias pectin methylesterase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA Interproscan
CC GO:0005618 cell wall IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0016108 tetraterpenoid metabolic process IEP Neighborhood
BP GO:0016109 tetraterpenoid biosynthetic process IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
BP GO:0016116 carotenoid metabolic process IEP Neighborhood
BP GO:0016117 carotenoid biosynthetic process IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR006501 Pectinesterase_inhib_dom 82 230
IPR000070 Pectinesterase_cat 300 604
No external refs found!