AMTR_s00071p00119440 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00071.93

Description : Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana


Gene families : OG0010052 (Archaeplastida) Phylogenetic Tree(s): OG0010052_tree ,
OG_05_0010082 (LandPlants) Phylogenetic Tree(s): OG_05_0010082_tree ,
OG_06_0008200 (SeedPlants) Phylogenetic Tree(s): OG_06_0008200_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00071p00119440
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT2G28050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
MA_382537g0010 No alias Pentatricopeptide repeat-containing protein At2g32630... 0.06 Archaeplastida
Solyc10g084090.3.1 No alias Pentatricopeptide repeat-containing protein At2g32630... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 171 200
IPR002885 Pentatricopeptide_repeat 207 234
IPR002885 Pentatricopeptide_repeat 237 286
IPR002885 Pentatricopeptide_repeat 447 496
IPR002885 Pentatricopeptide_repeat 309 356
IPR002885 Pentatricopeptide_repeat 524 565
IPR002885 Pentatricopeptide_repeat 378 426
No external refs found!