Aliases : evm_27.TU.AmTr_v1.0_scaffold00071.93
Description : Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana
Gene families : OG0010052 (Archaeplastida) Phylogenetic Tree(s): OG0010052_tree ,
OG_05_0010082 (LandPlants) Phylogenetic Tree(s): OG_05_0010082_tree ,
OG_06_0008200 (SeedPlants) Phylogenetic Tree(s): OG_06_0008200_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00071p00119440 | |
Cluster | HCCA: Cluster_74 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G28050 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Archaeplastida | |
MA_382537g0010 | No alias | Pentatricopeptide repeat-containing protein At2g32630... | 0.06 | Archaeplastida | |
Solyc10g084090.3.1 | No alias | Pentatricopeptide repeat-containing protein At2g32630... | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
MF | GO:0003917 | DNA topoisomerase type I activity | IEP | Neighborhood |
MF | GO:0003964 | RNA-directed DNA polymerase activity | IEP | Neighborhood |
MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
CC | GO:0005694 | chromosome | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006996 | organelle organization | IEP | Neighborhood |
BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
MF | GO:0019239 | deaminase activity | IEP | Neighborhood |
MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 171 | 200 |
IPR002885 | Pentatricopeptide_repeat | 207 | 234 |
IPR002885 | Pentatricopeptide_repeat | 237 | 286 |
IPR002885 | Pentatricopeptide_repeat | 447 | 496 |
IPR002885 | Pentatricopeptide_repeat | 309 | 356 |
IPR002885 | Pentatricopeptide_repeat | 524 | 565 |
IPR002885 | Pentatricopeptide_repeat | 378 | 426 |
No external refs found! |