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  5. AMTR_s00071p00198970

AMTR_s00071p00198970 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00071.216

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0009083 (LandPlants) Phylogenetic Tree(s): OG_05_0009083_tree ,
OG_06_0005290 (SeedPlants) Phylogenetic Tree(s): OG_06_0005290_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00071p00198970
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00217560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00047p00181740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.04 Archaeplastida
AT2G24840 AGL61, DIA AGAMOUS-like 61 0.02 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT3G30260 AGL79 AGAMOUS-like 79 0.08 Archaeplastida
AT3G57390 AGL18 AGAMOUS-like 18 0.01 Archaeplastida
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.07 Archaeplastida
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01012249001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01015649001 No alias No description available 0.04 Archaeplastida
GSVIVT01019883001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01027579001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01037031001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Gb_03068 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Gb_03807 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_15398 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_38922 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
LOC_Os04g23910.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g11970.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os10g39130.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 Archaeplastida
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
MA_1767g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_5917g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 Archaeplastida
MA_6544g0010 No alias Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.05 Archaeplastida
MA_78010g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_951956g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Mp4g12490.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.02 Archaeplastida
Pp3c17_24040V3.1 No alias AGAMOUS-like 66 0.03 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Solyc01g093960.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.07 Archaeplastida
Solyc02g084630.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc02g091550.2.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc03g114830.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc06g069430.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.03 Archaeplastida
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e003670_P002 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e012026_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e014021_P001 No alias MADS-box transcription factor 7 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Zm00001e015728_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e015924_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e019029_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e019057_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e030187_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 9 58
No external refs found!