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  5. AT1G54690

AT1G54690 (GAMMA-H2AX, H2AXB,...)


Aliases : GAMMA-H2AX, H2AXB, HTA3, G-H2AX

Description : gamma histone variant H2AX


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G54690
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00221900 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
AMTR_s00168p00048800 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Gb_06384 No alias histone (H2A) 0.06 Archaeplastida
Gb_07070 No alias histone (H2A) 0.07 Archaeplastida
Gb_12570 No alias histone (H2A) 0.03 Archaeplastida
Gb_25326 No alias histone (H2A) 0.05 Archaeplastida
Gb_37579 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.06 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.05 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.07 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.04 Archaeplastida
MA_10425800g0010 No alias histone (H2A) 0.14 Archaeplastida
MA_10426943g0010 No alias histone (H2A) 0.1 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.05 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.05 Archaeplastida
MA_22203g0020 No alias histone (H2A) 0.04 Archaeplastida
MA_427046g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_94328g0020 No alias histone (H2A) 0.05 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.07 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.04 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.03 Archaeplastida
Mp3g02370.1 No alias histone (H2A) 0.02 Archaeplastida
Pp3c10_13610V3.1 No alias gamma histone variant H2AX 0.11 Archaeplastida
Pp3c3_30120V3.1 No alias Histone superfamily protein 0.11 Archaeplastida
Pp3c5_1791V3.1 No alias histone H2A 10 0.04 Archaeplastida
Pp3c5_1800V3.1 No alias histone H2A 10 0.05 Archaeplastida
Pp3c6_29410V3.1 No alias histone H2A 10 0.02 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.1 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.12 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc03g005220.4.1 No alias histone (H2A) 0.16 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.08 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.07 Archaeplastida
Solyc09g082710.3.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.17 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.07 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.14 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.07 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.07 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
BP GO:0008283 cell proliferation RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP Neighborhood
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009165 nucleotide biosynthetic process IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
BP GO:0009735 response to cytokinin IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016925 protein sumoylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
CC GO:0022626 cytosolic ribosome IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030337 DNA polymerase processivity factor activity IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031125 rRNA 3'-end processing IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 17 96
IPR032454 Histone_H2A_C 99 132
No external refs found!