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  5. AMTR_s00074p00110430

AMTR_s00074p00110430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00074.33

Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0000421 (Archaeplastida) Phylogenetic Tree(s): OG0000421_tree ,
OG_05_0000820 (LandPlants) Phylogenetic Tree(s): OG_05_0000820_tree ,
OG_06_0001649 (SeedPlants) Phylogenetic Tree(s): OG_06_0001649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00074p00110430
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
Solyc11g008900.2.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Zm00001e021472_P004 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e039538_P001 No alias C3H zinc finger transcription factor 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
BP GO:0043545 molybdopterin cofactor metabolic process IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0051189 prosthetic group metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 118 142
IPR000571 Znf_CCCH 75 101
IPR000571 Znf_CCCH 163 188
No external refs found!