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  5. AMTR_s00077p00041680

AMTR_s00077p00041680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00077.23

Description : DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana


Gene families : OG0000989 (Archaeplastida) Phylogenetic Tree(s): OG0000989_tree ,
OG_05_0017285 (LandPlants) Phylogenetic Tree(s): OG_05_0017285_tree ,
OG_06_0015049 (SeedPlants) Phylogenetic Tree(s): OG_06_0015049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00077p00041680
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00146400 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH14... 0.01 Archaeplastida
Cpa|evm.model.tig00000865.28 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.02 Archaeplastida
GSVIVT01007875001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 Archaeplastida
Gb_27895 No alias RNA helicase (Brr2) 0.01 Archaeplastida
LOC_Os02g01740.1 No alias RNA helicase (Brr2) 0.03 Archaeplastida
LOC_Os03g11470.1 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 Archaeplastida
MA_10434882g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 Archaeplastida
MA_81219g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_81219g0020 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.02 Archaeplastida
MA_81219g0030 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.04 Archaeplastida
MA_823844g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 Archaeplastida
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.01 Archaeplastida
Mp1g06890.1 No alias RNA helicase (Brr2) 0.02 Archaeplastida
Pp3c1_35880V3.1 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.02 Archaeplastida
Solyc06g082100.4.1 No alias RNA helicase (Brr2) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008026 ATP-dependent helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 414 503
No external refs found!