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  5. AMTR_s00077p00108560

AMTR_s00077p00108560 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00077.93

Description : Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana


Gene families : OG0005904 (Archaeplastida) Phylogenetic Tree(s): OG0005904_tree ,
OG_05_0007631 (LandPlants) Phylogenetic Tree(s): OG_05_0007631_tree ,
OG_06_0009952 (SeedPlants) Phylogenetic Tree(s): OG_06_0009952_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00077p00108560
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Cre06.g254650 No alias Zinc finger CCCH domain-containing protein 15 OS=Oryza... 0.01 Archaeplastida
MA_67616g0010 No alias Zinc finger CCCH domain-containing protein 1... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 185 210
No external refs found!