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  5. AMTR_s00077p00115030

AMTR_s00077p00115030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00077.102

Description : Transcription elongation factor TFIIS OS=Arabidopsis thaliana


Gene families : OG0003338 (Archaeplastida) Phylogenetic Tree(s): OG0003338_tree ,
OG_05_0004673 (LandPlants) Phylogenetic Tree(s): OG_05_0004673_tree ,
OG_06_0005047 (SeedPlants) Phylogenetic Tree(s): OG_06_0005047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00077p00115030
Cluster HCCA: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
MA_42714g0010 No alias Transcription elongation factor TFIIS OS=Arabidopsis... 0.05 Archaeplastida
Smo437865 No alias Transcription elongation factor TFIIS OS=Arabidopsis thaliana 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001222 Znf_TFIIS 320 358
IPR017923 TFIIS_N 41 90
IPR003618 TFIIS_cen_dom 188 308
No external refs found!