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  5. AMTR_s00077p00161980

AMTR_s00077p00161980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00077.168

Description : Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT3 regulatory component


Gene families : OG0002892 (Archaeplastida) Phylogenetic Tree(s): OG0002892_tree ,
OG_05_0002758 (LandPlants) Phylogenetic Tree(s): OG_05_0002758_tree ,
OG_06_0004068 (SeedPlants) Phylogenetic Tree(s): OG_06_0004068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00077p00161980
Cluster HCCA: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
AT5G58290 RPT3 regulatory particle triple-A ATPase 3 0.03 Archaeplastida
Cpa|evm.model.tig00022075.46 No alias 26S proteasome regulatory subunit 6B homolog... 0.01 Archaeplastida
Cre09.g402450 No alias Protein degradation.26S proteasome.regulatory... 0.02 Archaeplastida
LOC_Os02g21970.1 No alias regulatory component RPT3 of 26S proteasome 0.04 Archaeplastida
Mp8g10830.1 No alias regulatory component RPT3 of 26S proteasome 0.02 Archaeplastida
Solyc06g082630.4.1 No alias regulatory component RPT3 of 26S proteasome 0.02 Archaeplastida
Solyc06g082660.4.1 No alias regulatory component RPT3 of 26S proteasome 0.03 Archaeplastida
Zm00001e022619_P001 No alias regulatory component RPT3 of 26S proteasome 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004372 glycine hydroxymethyltransferase activity IEP Neighborhood
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
MF GO:0019107 myristoyltransferase activity IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 200 333
No external refs found!