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  5. AMTR_s00077p00190160

AMTR_s00077p00190160 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00077.226

Description : External stimuli response.gravity.sensing and signalling.SCR transcription factor


Gene families : OG0002751 (Archaeplastida) Phylogenetic Tree(s): OG0002751_tree ,
OG_05_0001850 (LandPlants) Phylogenetic Tree(s): OG_05_0001850_tree ,
OG_06_0001742 (SeedPlants) Phylogenetic Tree(s): OG_06_0001742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00077p00190160
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
Gb_19167 No alias transcription factor (GRAS). SCR gravity signalling... 0.02 Archaeplastida
LOC_Os12g02870.1 No alias transcription factor (GRAS). SCR gravity signalling... 0.02 Archaeplastida
Solyc10g074680.2.1 No alias transcription factor (GRAS). SCR gravity signalling... 0.05 Archaeplastida
Zm00001e009237_P001 No alias transcription factor (GRAS). SCR gravity signalling... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005672 transcription factor TFIIA complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009235 cobalamin metabolic process IEP Neighborhood
BP GO:0009236 cobalamin biosynthetic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR005202 TF_GRAS 396 751
No external refs found!