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Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.17
Description : Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana
Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00078p00041370 | |
| Cluster | HCCA: Cluster_263 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00111p00140430 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g01400,... | 0.03 | Archaeplastida | |
| AT1G53330 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida | |
| AT1G80150 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
| AT3G09060 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
| AT4G01400 | No alias | FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... | 0.02 | Archaeplastida | |
| GSVIVT01024665001 | No alias | Pentatricopeptide repeat-containing protein At3g09060... | 0.03 | Archaeplastida | |
| Gb_07822 | No alias | Pentatricopeptide repeat-containing protein At3g09060... | 0.03 | Archaeplastida | |
| LOC_Os01g48140.1 | No alias | Pentatricopeptide repeat-containing protein At5g46100... | 0.02 | Archaeplastida | |
| LOC_Os02g26890.1 | No alias | Pentatricopeptide repeat-containing protein At5g18475... | 0.02 | Archaeplastida | |
| LOC_Os05g04160.1 | No alias | Pentatricopeptide repeat-containing protein At3g48810... | 0.02 | Archaeplastida | |
| LOC_Os08g39050.1 | No alias | Pentatricopeptide repeat-containing protein At1g80150,... | 0.02 | Archaeplastida | |
| MA_128052g0010 | No alias | Pentatricopeptide repeat-containing protein At3g53700,... | 0.03 | Archaeplastida | |
| MA_525159g0010 | No alias | Pentatricopeptide repeat-containing protein At1g07740,... | 0.02 | Archaeplastida | |
| MA_71816g0020 | No alias | Pentatricopeptide repeat-containing protein At3g14580,... | 0.02 | Archaeplastida | |
| Solyc02g079830.1.1 | No alias | Pentatricopeptide repeat-containing protein At3g13160,... | 0.05 | Archaeplastida | |
| Solyc09g061760.1.1 | No alias | Pentatricopeptide repeat-containing protein At2g17525,... | 0.02 | Archaeplastida | |
| Solyc12g014330.1.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Archaeplastida | |
| Solyc12g035170.3.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
| Zm00001e003447_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Zm00001e011589_P001 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| Zm00001e027557_P001 | No alias | Pentatricopeptide repeat-containing protein At3g48810... | 0.03 | Archaeplastida | |
| Zm00001e028732_P001 | No alias | Pentatricopeptide repeat-containing protein At3g09060... | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004659 | prenyltransferase activity | IEP | Neighborhood |
| BP | GO:0006417 | regulation of translation | IEP | Neighborhood |
| BP | GO:0006448 | regulation of translational elongation | IEP | Neighborhood |
| BP | GO:0006479 | protein methylation | IEP | Neighborhood |
| BP | GO:0008104 | protein localization | IEP | Neighborhood |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0008213 | protein alkylation | IEP | Neighborhood |
| MF | GO:0008276 | protein methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008378 | galactosyltransferase activity | IEP | Neighborhood |
| BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Neighborhood |
| BP | GO:0015031 | protein transport | IEP | Neighborhood |
| BP | GO:0015833 | peptide transport | IEP | Neighborhood |
| MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016571 | histone methylation | IEP | Neighborhood |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | Neighborhood |
| BP | GO:0017182 | peptidyl-diphthamide metabolic process | IEP | Neighborhood |
| BP | GO:0017183 | peptidyl-diphthamide biosynthetic process from peptidyl-histidine | IEP | Neighborhood |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Neighborhood |
| MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
| BP | GO:0018202 | peptidyl-histidine modification | IEP | Neighborhood |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
| BP | GO:0019725 | cellular homeostasis | IEP | Neighborhood |
| BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Neighborhood |
| BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
| BP | GO:0034248 | regulation of cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0034968 | histone lysine methylation | IEP | Neighborhood |
| MF | GO:0042054 | histone methyltransferase activity | IEP | Neighborhood |
| MF | GO:0042393 | histone binding | IEP | Neighborhood |
| BP | GO:0042592 | homeostatic process | IEP | Neighborhood |
| BP | GO:0042886 | amide transport | IEP | Neighborhood |
| BP | GO:0045184 | establishment of protein localization | IEP | Neighborhood |
| BP | GO:0045454 | cell redox homeostasis | IEP | Neighborhood |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | Neighborhood |
| BP | GO:0065008 | regulation of biological quality | IEP | Neighborhood |
| MF | GO:0070403 | NAD+ binding | IEP | Neighborhood |
| BP | GO:0071702 | organic substance transport | IEP | Neighborhood |
| BP | GO:0071705 | nitrogen compound transport | IEP | Neighborhood |
| BP | GO:1900247 | regulation of cytoplasmic translational elongation | IEP | Neighborhood |
| BP | GO:2000765 | regulation of cytoplasmic translation | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 416 | 447 |
| IPR002885 | Pentatricopeptide_repeat | 454 | 502 |
| IPR002885 | Pentatricopeptide_repeat | 559 | 608 |
| IPR002885 | Pentatricopeptide_repeat | 183 | 228 |
| IPR002885 | Pentatricopeptide_repeat | 279 | 326 |
| IPR002885 | Pentatricopeptide_repeat | 349 | 398 |
| IPR002885 | Pentatricopeptide_repeat | 527 | 557 |
| IPR002885 | Pentatricopeptide_repeat | 117 | 142 |
| IPR002885 | Pentatricopeptide_repeat | 248 | 275 |
| No external refs found! |