AMTR_s00078p00056260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.29

Description : RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase


Gene families : OG0000823 (Archaeplastida) Phylogenetic Tree(s): OG0000823_tree ,
OG_05_0003329 (LandPlants) Phylogenetic Tree(s): OG_05_0003329_tree ,
OG_06_0002749 (SeedPlants) Phylogenetic Tree(s): OG_06_0002749_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00078p00056260
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
MA_20320g0020 No alias RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc04g014870.3.1 No alias ssRNA polymerase (RDR6) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 433 1010
No external refs found!