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  5. AMTR_s00078p00080080

AMTR_s00078p00080080 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.54

No description available


Gene families : OG0004051 (Archaeplastida) Phylogenetic Tree(s): OG0004051_tree ,
OG_05_0006068 (LandPlants) Phylogenetic Tree(s): OG_05_0006068_tree ,
OG_06_0005821 (SeedPlants) Phylogenetic Tree(s): OG_06_0005821_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00078p00080080
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Gb_05674 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp5g06160.1 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
BP GO:0000966 RNA 5'-end processing IEP Neighborhood
BP GO:0001682 tRNA 5'-leader removal IEP Neighborhood
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004526 ribonuclease P activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034471 ncRNA 5'-end processing IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0099116 tRNA 5'-end processing IEP Neighborhood
InterPro domains Description Start Stop
IPR003788 NDUFAF7 146 411
No external refs found!