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  5. AMTR_s00078p00114350

AMTR_s00078p00114350 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.87

Description : Cold shock domain-containing protein 3 OS=Arabidopsis thaliana


Gene families : OG0009455 (Archaeplastida) Phylogenetic Tree(s): OG0009455_tree ,
OG_05_0009828 (LandPlants) Phylogenetic Tree(s): OG_05_0009828_tree ,
OG_06_0010921 (SeedPlants) Phylogenetic Tree(s): OG_06_0010921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00078p00114350
Cluster HCCA: Cluster_78


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR025836 Zn_knuckle_CX2CX4HX4C 218 235
IPR025836 Zn_knuckle_CX2CX4HX4C 763 778
IPR025836 Zn_knuckle_CX2CX4HX4C 680 695
IPR025836 Zn_knuckle_CX2CX4HX4C 708 723
IPR025836 Zn_knuckle_CX2CX4HX4C 335 349
IPR025836 Zn_knuckle_CX2CX4HX4C 736 751
IPR025836 Zn_knuckle_CX2CX4HX4C 381 395
IPR025836 Zn_knuckle_CX2CX4HX4C 652 666
IPR025836 Zn_knuckle_CX2CX4HX4C 848 862
IPR025836 Zn_knuckle_CX2CX4HX4C 568 582
IPR025836 Zn_knuckle_CX2CX4HX4C 280 294
IPR025836 Zn_knuckle_CX2CX4HX4C 437 452
IPR025836 Zn_knuckle_CX2CX4HX4C 495 509
IPR025836 Zn_knuckle_CX2CX4HX4C 540 555
IPR025836 Zn_knuckle_CX2CX4HX4C 242 263
IPR025836 Zn_knuckle_CX2CX4HX4C 467 481
IPR025836 Zn_knuckle_CX2CX4HX4C 596 611
IPR025836 Zn_knuckle_CX2CX4HX4C 792 807
IPR025836 Zn_knuckle_CX2CX4HX4C 820 834
IPR025829 Zn_knuckle_CX2CX3GHX4C 621 643
No external refs found!