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  5. AMTR_s00078p00178430

AMTR_s00078p00178430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.175

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS18 component


Gene families : OG0001796 (Archaeplastida) Phylogenetic Tree(s): OG0001796_tree ,
OG_05_0001726 (LandPlants) Phylogenetic Tree(s): OG_05_0001726_tree ,
OG_06_0002411 (SeedPlants) Phylogenetic Tree(s): OG_06_0002411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00078p00178430
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT1G22780 RPS18A, PFL, PFL1 Ribosomal protein S13/S18 family 0.14 Archaeplastida
AT1G34030 No alias Ribosomal protein S13/S18 family 0.11 Archaeplastida
AT4G09800 RPS18C S18 ribosomal protein 0.17 Archaeplastida
Cre06.g272950 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.31 Archaeplastida
GSVIVT01017975001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
GSVIVT01034582001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
LOC_Os03g58050.1 No alias component RPS18 of SSU proteome 0.22 Archaeplastida
LOC_Os07g07709.1 No alias component RPS18 of SSU proteome 0.04 Archaeplastida
MA_10429265g0010 No alias component RPS18 of SSU proteome 0.23 Archaeplastida
MA_10431843g0010 No alias component RPS18 of SSU proteome 0.1 Archaeplastida
Mp1g07420.1 No alias component RPS18 of SSU proteome 0.27 Archaeplastida
Mp5g02820.1 No alias component RPS18 of SSU proteome 0.28 Archaeplastida
Pp3c16_2090V3.1 No alias Ribosomal protein S13/S18 family 0.22 Archaeplastida
Pp3c25_1240V3.1 No alias Ribosomal protein S13/S18 family 0.22 Archaeplastida
Pp3c25_1430V3.1 No alias Ribosomal protein S13/S18 family 0.25 Archaeplastida
Pp3c5_2800V3.1 No alias Ribosomal protein S13/S18 family 0.07 Archaeplastida
Pp3c6_21770V3.1 No alias Ribosomal protein S13/S18 family 0.21 Archaeplastida
Pp3c6_21830V3.1 No alias Ribosomal protein S13/S18 family 0.03 Archaeplastida
Smo267619 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
Solyc03g078290.3.1 No alias component RPS18 of SSU proteome 0.2 Archaeplastida
Solyc06g073370.4.1 No alias component RPS18 of SSU proteome 0.19 Archaeplastida
Solyc11g005680.2.1 No alias component RPS18 of SSU proteome 0.09 Archaeplastida
Zm00001e005967_P001 No alias component RPS18 of SSU proteome 0.23 Archaeplastida
Zm00001e011880_P001 No alias component RPS18 of SSU proteome 0.2 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016531 copper chaperone activity IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 14 142
No external refs found!