AMTR_s00080p00087770 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00080.30

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor

Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0000055 (SeedPlants) Phylogenetic Tree(s): OG_06_0000055_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00080p00087770
Cluster	HCCA: Cluster_138

Target	Alias	Description	ECC score	Gene Family Method
AT1G07640	OBP2	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT2G28810	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT2G34140	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT3G61850	DAG1	Dof-type zinc finger DNA-binding family protein	0.05	Archaeplastida
GSVIVT01007992001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01016538001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01021212001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01034189001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
Gb_12877	No alias	transcription factor (DOF)	0.03	Archaeplastida
Gb_35447	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os01g17000.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os03g07360.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
MA_16692g0010	No alias	transcription factor (DOF)	0.03	Archaeplastida
MA_459791g0010	No alias	transcription factor (DOF)	0.02	Archaeplastida
MA_46520g0010	No alias	transcription factor (DOF)	0.04	Archaeplastida
MA_56828g0010	No alias	transcription factor (DOF)	0.04	Archaeplastida
Mp1g18540.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Pp3c15_3180V3.1	No alias	cycling DOF factor 3	0.05	Archaeplastida
Pp3c9_4910V3.1	No alias	cycling DOF factor 2	0.02	Archaeplastida
Solyc02g090220.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc03g112930.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc06g071480.3.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc06g076030.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc08g082910.2.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc09g010680.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e006190_P001	No alias	transcription factor (DOF)	0.06	Archaeplastida
Zm00001e007228_P002	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e015414_P004	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e015597_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e019172_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e023218_P004	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e027634_P002	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e035074_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e041444_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000015	phosphopyruvate hydratase complex	IEP	Neighborhood
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004634	phosphopyruvate hydratase activity	IEP	Neighborhood
MF	GO:0004673	protein histidine kinase activity	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
MF	GO:0009039	urease activity	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
BP	GO:0009581	detection of external stimulus	IEP	Neighborhood
BP	GO:0009582	detection of abiotic stimulus	IEP	Neighborhood
BP	GO:0009583	detection of light stimulus	IEP	Neighborhood
BP	GO:0009584	detection of visible light	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
MF	GO:0016151	nickel cation binding	IEP	Neighborhood
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Neighborhood
MF	GO:0016836	hydro-lyase activity	IEP	Neighborhood
BP	GO:0018298	protein-chromophore linkage	IEP	Neighborhood
BP	GO:0019627	urea metabolic process	IEP	Neighborhood
BP	GO:0043419	urea catabolic process	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0043605	cellular amide catabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Neighborhood
BP	GO:0044282	small molecule catabolic process	IEP	Neighborhood
CC	GO:0044445	cytosolic part	IEP	Neighborhood
BP	GO:0051606	detection of stimulus	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0071941	nitrogen cycle metabolic process	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	50	109

External Links

No external refs found!

AMTR_s00080p00087770 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation