1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00083p00015670

AMTR_s00083p00015670


Description : Putative pentatricopeptide repeat-containing protein At1g10330 OS=Arabidopsis thaliana


Gene families : OG0010995 (Archaeplastida) Phylogenetic Tree(s): OG0010995_tree ,
OG_05_0010952 (LandPlants) Phylogenetic Tree(s): OG_05_0010952_tree ,
OG_06_0011507 (SeedPlants) Phylogenetic Tree(s): OG_06_0011507_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00083p00015670
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01030455001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 417 445
IPR002885 Pentatricopeptide_repeat 147 172
IPR002885 Pentatricopeptide_repeat 42 68
IPR002885 Pentatricopeptide_repeat 248 268
IPR002885 Pentatricopeptide_repeat 350 374
IPR002885 Pentatricopeptide_repeat 276 323
IPR002885 Pentatricopeptide_repeat 173 220
No external refs found!