1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00084p00111140

AMTR_s00084p00111140 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00084.30

Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000184 (Archaeplastida) Phylogenetic Tree(s): OG0000184_tree ,
OG_05_0000297 (LandPlants) Phylogenetic Tree(s): OG_05_0000297_tree ,
OG_06_0002202 (SeedPlants) Phylogenetic Tree(s): OG_06_0002202_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00084p00111140
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00046460 evm_27.TU.AmTr_v1... Nutrient uptake.iron uptake.reduction-based strategy... 0.01 Archaeplastida
Gb_05276 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os06g50900.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Smo91237 No alias External stimuli response.temperature.ICE-CBF cold... 0.02 Archaeplastida
Solyc03g118310.4.1 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.01 Archaeplastida
Solyc06g051550.4.1 No alias transcription factor (bHLH). iron uptake transcription factor FIT 0.02 Archaeplastida
Solyc07g018010.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e025243_P003 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e040732_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0004372 glycine hydroxymethyltransferase activity IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0005986 sucrose biosynthetic process IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
BP GO:0006743 ubiquinone metabolic process IEP Neighborhood
BP GO:0006744 ubiquinone biosynthetic process IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0019203 carbohydrate phosphatase activity IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
BP GO:0042180 cellular ketone metabolic process IEP Neighborhood
BP GO:0042181 ketone biosynthetic process IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
MF GO:0050307 sucrose-phosphate phosphatase activity IEP Neighborhood
MF GO:0050308 sugar-phosphatase activity IEP Neighborhood
BP GO:1901661 quinone metabolic process IEP Neighborhood
BP GO:1901663 quinone biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 105 129
No external refs found!