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  5. AMTR_s00085p00174790

AMTR_s00085p00174790 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00085.111

Description : Probable F-box protein At4g22030 OS=Arabidopsis thaliana


Gene families : OG0001122 (Archaeplastida) Phylogenetic Tree(s): OG0001122_tree ,
OG_05_0000683 (LandPlants) Phylogenetic Tree(s): OG_05_0000683_tree ,
OG_06_0000651 (SeedPlants) Phylogenetic Tree(s): OG_06_0000651_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00085p00174790
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00129060 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT4G04480 No alias unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:... 0.04 Archaeplastida
AT4G22030 No alias F-box family protein with a domain of unknown function (DUF295) 0.03 Archaeplastida
LOC_Os02g13220.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os02g13260.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os02g28590.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp5g00910.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp5g17910.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Smo405256 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.02 Archaeplastida
Zm00001e014444_P001 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0047134 protein-disulfide reductase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!